Welcome to NucKit’s documentation

Description

Welcome to the Nucleotide sequence analysis took kit, a set of command line utilities for managing larger volumes of nucleotide sequences all based in the R-programming language. These utilities take advantange of BioConductoR packages, including Biostrings, ShortRead, and GenomicRanges.

This documentation gives the user an overview of the utilities, including how to install and work through processing a sample dataset.

The following pages will discuss the specific utilities and how to use them after stepping through the installation and a quick overview of a sample dataset.